PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010546434.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

TCP

Protein Properties

Length: 152aa MW: 17283.5 Da PI: 9.3762

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010546434.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	91.2	2.3e-28	55	131	3	66
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............s 66 g+kdrhsk++T +g+RdRR+Rls+++a +++dLqd LG+ ++sk i+WLl +ak +++++ + XP_010546434.1 55 GGKDRHSKVCTVRGLRDRRIRLSVPTAVQLYDLQDGLGLNQPSKVIDWLLDAAKNDVDKIPPLqfphgfnqfypnlM 131 68************************************************************944444444444442 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.489	56	114	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.4E-28	56	145	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MRECEDFQTK QEADRRHQSS VNLNQIQPST SSSLSRHWTS ALKNPRIVRD SRILGGKDRH 60 SKVCTVRGLR DRRIRLSVPT AVQLYDLQDG LGLNQPSKVI DWLLDAAKND VDKIPPLQFP 120 HGFNQFYPNL MFGSSSNCES LSGNQDLFKN CV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	6e-18	61	115	1	55	Putative transcription factor PCF6
5zkt_B	6e-18	61	115	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010546434.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010546434.1	1e-110	PREDICTED: transcription factor TCP5-like
Swissprot	Q9FME3	2e-61	TCP5_ARATH; Transcription factor TCP5
TrEMBL	R0EXI8	1e-65	R0EXI8_9BRAS; Uncharacterized protein
STRING	XP_010546434.1	1e-110	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3576	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	6e-60	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]