PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546448.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 377aa    MW: 40039.2 Da    PI: 6.2339
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546448.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.7e-21166215255
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrd +     +  r++lg+f+tae Aa+a+++a+++++g
  XP_010546448.1 166 KYRGVRQRP-WGKWAAEIRDpF-----KaVRVWLGTFDTAEAAARAYDEAALRFRG 215
                     8********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.4E-33165224IPR001471AP2/ERF domain
PfamPF008475.7E-14166215IPR001471AP2/ERF domain
CDDcd000181.97E-22166225No hitNo description
SMARTSM003801.9E-38166229IPR001471AP2/ERF domain
PROSITE profilePS5103225.594166223IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23166224IPR016177DNA-binding domain
PRINTSPR003671.2E-11167178IPR001471AP2/ERF domain
PRINTSPR003671.2E-11189205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MCGLKVADPK DNDATKSSEA REDDRTTTTS EFDHWMYLLA PEDRDAATAS LFPGLTRQME  60
MSAIVSALTH VVAGNAPSYH IPAAEAVVSG GGGEGTSGCR HCLDNFPATV SITAVTAGEY  120
WSVAGGGARG GEASSNISAA TGPLYEYSTA VASETSSYSE DQPKRKYRGV RQRPWGKWAA  180
EIRDPFKAVR VWLGTFDTAE AAARAYDEAA LRFRGNKAKL NFPENVKLVS PAAPLPETAV  240
PRPTYSSISG SGTAFLPIQP GPDPMRDSGS GSYVANYSEM IHTGYHQSMS SYDHPMMFSS  300
SVPQAGVVPM RSSGLSHSSL PLVSPSTVSS HSSSSSSTTL PFFPAAHKPE TASRSGDSYL  360
LEPPWSDDRK HDHSSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-22165226163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546448.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546448.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A3P5YCE72e-72A0A3P5YCE7_BRACM; Uncharacterized protein
TrEMBLM4F9N12e-72M4F9N1_BRARP; Uncharacterized protein
STRINGXP_010546448.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91182137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.12e-50ERF family protein