PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546892.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family FAR1
Protein Properties Length: 780aa    MW: 89580 Da    PI: 8.0866
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546892.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.82.3e-2060134189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     +fYn+YA+++GF+vr+ + ++s+++g++ +r+fvCsk g++ +              +rtgC a ++v+++++gkw+++++++eHnHel
  XP_010546892.1  60 EFYNSYATSTGFKVRTGQLYRSRTDGTVSSRRFVCSKGGFQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHEL 134
                     6***************************************876..............589***************************98 PP
2FAR168.41.8e-21220296191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     +fY++YA+ vGF+vr+ +  +sk +g+it+r+fvCskeg+++++              r+gC a +++k++++g w v++l+++HnHel p
  XP_010546892.1 220 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHELEP 296
                     6***************************************9994..............799***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-1660134IPR004330FAR1 DNA binding domain
PfamPF031017.3E-17220296IPR004330FAR1 DNA binding domain
PfamPF105516.5E-28392484IPR018289MULE transposase domain
PROSITE profilePS5096610.373666702IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-8673699IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-8677704IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MESADTEPAS LNCGNNMVVK AYPLGMVRIM NNNGVGEDEG DSEVEPYVGL EFDSAEEARE  60
FYNSYATSTG FKVRTGQLYR SRTDGTVSSR RFVCSKGGFQ LNSRTGCPAF IRVQRRDTGK  120
WVLDQIQKEH NHELGGQVEE TPRPPAVSQR RPAATKLAIS VPHRPKMKVI DESDKAQSCP  180
SGAISFKRFK GAEDSNGQIQ PKATEPYAGL EFGSANEGCQ FYQAYAEVVG FRVRIGQLFR  240
SKVDGSITSR RFVCSKEGFQ HPSRMGCGAY MRIKRQDSGG WIVDRLNKDH NHELEPGKKN  300
AGMKKITEDA TGGLDSVDLI ELNDFNNHIK KTRENTIGKE WYPMLLDYFQ TRQAEDMGFF  360
YAVELDSNGS CMSIFWADSR ARFACSQFGD AVVFDTSYRK GNYSIPFATF IGFNHHRQPV  420
LLGCALISDE SKEAFTWLFQ TWLRAMSGRR PRSIVADQDS AILQAVAQVF PGTHHRYSAW  480
QIRAKERENL RSFPNEFKYE YEKCIYQTQT TVEFDTLWNV LVNKYGLRDN VWLREMYEKR  540
ENWVPAYLRA TFFGGIPING SIEPFFGTSL NSQTPIREFV SRYEQGLEQR REEERKEDFN  600
SYNLQPFLQT KEIVEEQCRR LYTLTIFRIF QNELVQSYNY LGLKTYEEGA ISRFLVRKCG  660
NENEKHAVTF SASNLNASCS CQMFEYEGLL CRHILKVFNL LDIRELPSRY ILHRWTKNAE  720
FGFVRDVESG VSSQDLKALM VWSLREAASK YIEFGTSSLE KYKLAYEIMR EGGKKLCWQR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546892.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546892.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7 isoform X1
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLR0HJN80.0R0HJN8_9BRAS; Uncharacterized protein
STRINGXP_010546892.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]