PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546925.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 476aa    MW: 50364.5 Da    PI: 8.1595
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546925.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.51.9e-125075227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +++rtG C yG+rC+F+H++
  XP_010546925.1 50 DEPDCIYYLRTGACGYGSRCRFNHPR 75
                    6899********************96 PP
2zf-CCCH391.3e-1298122327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++f++tGtCkyG++Ck++H++
  XP_010546925.1  98 QPVCQHFMKTGTCKYGASCKYHHPR 122
                     689********************96 PP
3zf-CCCH40.16.1e-13145168326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C++++rtG+Ck+G++C+F+H+
  XP_010546925.1 145 EKECSYYMRTGQCKFGATCRFHHP 168
                     689********************9 PP
4zf-CCCH38.71.7e-12306331126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C++f+rtG Ck+G++C+++H+
  XP_010546925.1 306 PGQPECQYFMRTGNCKFGSSCRYHHP 331
                     5789*********************9 PP
5zf-CCCH36.49e-12352378127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++t+lC +fa+ GtC++G+ C+F H++
  XP_010546925.1 352 PGTPLCTHFAQHGTCRFGPACRFDHSM 378
                     68***********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4464876IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-54875IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-105075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-55475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.78895123IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-795122IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-1098122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-699123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-6100122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6142169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483142170IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-6142169IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10145168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4148167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718305333IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-8305332IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-10307331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6309334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-5311330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713351379IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7351378IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9352377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6352381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-6354378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MERYGRAGEE GSRSDPSPEW SAPGGETGVE ASMWRLGLRS GGESYPERPD EPDCIYYLRT  60
GACGYGSRCR FNHPRDRGAV IPFVMGASRR DAGESIGQPV CQHFMKTGTC KYGASCKYHH  120
PRQGSSSGST PVMLNYMGYP LRLGEKECSY YMRTGQCKFG ATCRFHHPVP PGVQLPSPPP  180
PPVMQVSPMA AQAIYPTVQS PSVPSSQQYE VVMPRPPFLP GSYVQSPYGT MVLPPGMVPY  240
SGWNPYAASV SAIPSTGTQP SVGSGSIYGL APLSPSAPAY TGPYQSGPSS VSPSSTQKEQ  300
LFPQRPGQPE CQYFMRTGNC KFGSSCRYHH PLDAVPPITS VILGPTGLPL RPGTPLCTHF  360
AQHGTCRFGP ACRFDHSMGS LSYSPSASSL TDMPVAPYPV GSSLGTLAPS SSSSDLRPEL  420
ISSSSREIVS PKTTTSGSET APATVSSPTS GPSHPEPPAQ TAGVDGSSSL EARTSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546925.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546925.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like isoform X1
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A1J3IQY40.0A0A1J3IQY4_NOCCA; Zinc finger CCCH domain-containing protein 58
STRINGXP_010546925.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-170C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]