PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010546927.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 472aa    MW: 49907.9 Da    PI: 8.1595
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010546927.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.51.9e-125075227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +++rtG C yG+rC+F+H++
  XP_010546927.1 50 DEPDCIYYLRTGACGYGSRCRFNHPR 75
                    6899********************96 PP
2zf-CCCH391.3e-1294118327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++f++tGtCkyG++Ck++H++
  XP_010546927.1  94 QPVCQHFMKTGTCKYGASCKYHHPR 118
                     689********************96 PP
3zf-CCCH40.16e-13141164326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C++++rtG+Ck+G++C+F+H+
  XP_010546927.1 141 EKECSYYMRTGQCKFGATCRFHHP 164
                     689********************9 PP
4zf-CCCH38.71.7e-12302327126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C++f+rtG Ck+G++C+++H+
  XP_010546927.1 302 PGQPECQYFMRTGNCKFGSSCRYHHP 327
                     5789*********************9 PP
5zf-CCCH36.48.9e-12348374127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++t+lC +fa+ GtC++G+ C+F H++
  XP_010546927.1 348 PGTPLCTHFAQHGTCRFGPACRFDHSM 374
                     68***********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.5E-54875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4464876IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-105075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-55475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.78891119IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-791118IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-1094118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-695119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-696118IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-6138165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6138165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483138166IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10141164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4144163IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-8301328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718301329IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-10303327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6305330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-5307326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713347375IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7347374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6348377IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9348373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-6350374IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MERYGRAGEE GSRSDPSPEW SAPGGETGVE ASMWRLGLRS GGESYPERPD EPDCIYYLRT  60
GACGYGSRCR FNHPRDRGAV MGASRRDAGE SIGQPVCQHF MKTGTCKYGA SCKYHHPRQG  120
SSSGSTPVML NYMGYPLRLG EKECSYYMRT GQCKFGATCR FHHPVPPGVQ LPSPPPPPVM  180
QVSPMAAQAI YPTVQSPSVP SSQQYEVVMP RPPFLPGSYV QSPYGTMVLP PGMVPYSGWN  240
PYAASVSAIP STGTQPSVGS GSIYGLAPLS PSAPAYTGPY QSGPSSVSPS STQKEQLFPQ  300
RPGQPECQYF MRTGNCKFGS SCRYHHPLDA VPPITSVILG PTGLPLRPGT PLCTHFAQHG  360
TCRFGPACRF DHSMGSLSYS PSASSLTDMP VAPYPVGSSL GTLAPSSSSS DLRPELISSS  420
SREIVSPKTT TSGSETAPAT VSSPTSGPSH PEPPAQTAGV DGSSSLEART SS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010546927.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010546927.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like isoform X2
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A1J3IQY40.0A0A1J3IQY4_NOCCA; Zinc finger CCCH domain-containing protein 58
STRINGXP_010546925.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-172C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]