PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547092.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 415aa    MW: 44939.8 Da    PI: 6.9636
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547092.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-053003381154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++++ +  L++l+ +      +K + a++L++A+eY+k L
  XP_010547092.1 300 VRKENLRDQITALQQLVSPF-----GKTDTASVLQEAIEYVKFL 338
                     578899***********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.579289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-10299352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-8299345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.46E-6299343No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MAEEFPVTGI CGGAWWNSPK TVMSPAEICL SPCSMGACGN NSIAFGHKLQ REPDSDSGGS  60
TVTIDSTLQM MGLGFPTSSS SDWNQNILQG DLNSSLMGRT SQDYCQGFLS VTSPYAYNPS  120
SSSSSSSSSS SSSSSSSSSS SSSPSSSLLQ SFYENGLNPS LLNNNRTMNN TLLMSMTSCS  180
EDPHISWSKT EPFLEPMSSA MIPSSKQQTD YGFNMSNTNT PPFWRSSNPN LDNIRTNSFV  240
TSPQISTRFG DKPLSCHNNI APKINLQRSS CGQAAKKASD EHAAKKPRIT TPSPLPTFKV  300
RKENLRDQIT ALQQLVSPFG KTDTASVLQE AIEYVKFLHD QVSVLCTPYL KQGTSAQQQQ  360
QQQQFSDKLK DPQGNGTQDL KSRGLCLVPI SSTFPVANET TADFWTPTFG GNNFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547092.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547092.10.0PREDICTED: transcription factor bHLH112 isoform X4
SwissprotQ94JL31e-123BH112_ARATH; Transcription factor bHLH112
TrEMBLA0A1J3CDX31e-126A0A1J3CDX3_NOCCA; Uncharacterized protein
STRINGXP_010547064.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.11e-120bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]