PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010547134.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 503aa MW: 54735.8 Da PI: 6.7025

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010547134.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.4e-09	332	379	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_010547134.1 332 SHSLAERVRREKISERMKMLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 379 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.45E-17	326	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.09E-11	326	383	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-17	328	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.745	328	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-6	332	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.2E-11	334	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MENELFVNTG LPPSPAPEIA MHFEPPPYSS AMMNWHLMSS STGIQPLEPN LGRNPTQDCF 60 FSEKSTEQSI FDSALSSLVS SPTASNSYFS GGGVGGGDNF IIRELIGKLG NIGSSSGEIY 120 GTPARNGSCY GTPMSSPPPA KLTSPMKVAK TTPLTEFSGD PGFAERAARF SCFGSRSFNG 180 RTTSPISGNN AAGVAGGCNK AVNGTAAEVG GNGKLPRVSS SPALKPTALA SQMCKNPPGD 240 EDQCPMVCGE FTRKRKYVPK AKPKENPASP SSNSLKEDSD PKRRKNSEED GEKEELVEEE 300 GKGNKNKNIT KPPEAPKDYI HVRARRGQAT DSHSLAERVR REKISERMKM LQDLVPGCNK 360 VTGKALMLDE IINYVQSLQR QVEFLSMKLA SVNTRLDYNV DTLVSKDMVP PCNDHPMHIQ 420 QLGQVHQQNN LQLRPNISSL RTILQCPIVP LETSIPQYPI FCEDELNSLV QMGFAHCQSE 480 PTVQMELQNI QSSNQEPDMK IEL

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MENELFVNTG LPPSPAPEIA MHFEPPPYSS AMMNWHLMSS STGIQPLEPN LGRNPTQDCF  60
FSEKSTEQSI FDSALSSLVS SPTASNSYFS GGGVGGGDNF IIRELIGKLG NIGSSSGEIY  120
GTPARNGSCY GTPMSSPPPA KLTSPMKVAK TTPLTEFSGD PGFAERAARF SCFGSRSFNG  180
RTTSPISGNN AAGVAGGCNK AVNGTAAEVG GNGKLPRVSS SPALKPTALA SQMCKNPPGD  240
EDQCPMVCGE FTRKRKYVPK AKPKENPASP SSNSLKEDSD PKRRKNSEED GEKEELVEEE  300
GKGNKNKNIT KPPEAPKDYI HVRARRGQAT DSHSLAERVR REKISERMKM LQDLVPGCNK  360
VTGKALMLDE IINYVQSLQR QVEFLSMKLA SVNTRLDYNV DTLVSKDMVP PCNDHPMHIQ  420
QLGQVHQQNN LQLRPNISSL RTILQCPIVP LETSIPQYPI FCEDELNSLV QMGFAHCQSE  480
PTVQMELQNI QSSNQEPDMK IEL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010547134.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010547134.1	0.0	PREDICTED: transcription factor bHLH62-like
Swissprot	Q9SRT2	1e-156	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A0D3DBT1	1e-166	A0A0D3DBT1_BRAOL; Uncharacterized protein
STRING	XP_010547134.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-147	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]