PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547247.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 358aa    MW: 40203.8 Da    PI: 8.4759
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547247.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.6e-10294339655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR+ri +++ +L++l P      +k  s a++L +Av+ Ik+L+
  XP_010547247.1 294 SIAERVRRNRISQKMKKLQDLFPDM----DKQTSTADMLDMAVDQIKELE 339
                     689*********************7....688***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.897288338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-13291351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.20E-10292343No hitNo description
Gene3DG3DSA:4.10.280.101.5E-12293348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10294344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-7294339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MACACSFVRT GGQKGNYENV SGKHSYEFIK EEMSLVYGNN FTHPEAEFIK NEDFMDPYFP  60
NQQQEQLIRT NGAARYRSTP SPFFNNSFEN GGNYRSFRSP SPEMDSFFAD VMKTHENKEP  120
ITHQNNDLLG LQNSGNCHSS VNGSFSFMNN GSSNGSCLMK QHSSPPGLLS DLMIENEFKN  180
SNNSHNHMNM KYRPPVSGSS IMPPHVSDLG SDFSSDSWNK NTSSDVFKGI GGMDITFSGS  240
ETQNGSSRNK LAHHLSLPTT FSEKDSVEKF LHFQGTSVPC KVRAKRGFAT HPRSIAERVR  300
RNRISQKMKK LQDLFPDMDK QTSTADMLDM AVDQIKELEK QVKALNYSRA KCRCSGKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547247.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547247.10.0PREDICTED: transcription factor bHLH130-like isoform X1
TrEMBLA0A3N7FJ223e-72A0A3N7FJ22_POPTR; Uncharacterized protein
STRINGXP_010547247.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2538023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.11e-43bHLH family protein