PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547248.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 326aa    MW: 36650.8 Da    PI: 8.7107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547248.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-10262307655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR+ri +++ +L++l P      +k  s a++L +Av+ Ik+L+
  XP_010547248.1 262 SIAERVRRNRISQKMKKLQDLFPDM----DKQTSTADMLDMAVDQIKELE 307
                     689*********************7....688***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.897256306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-13259319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.56E-10260311No hitNo description
Gene3DG3DSA:4.10.280.101.3E-12261316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-7262307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10262312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSLVYGNNFT HPEAEFIKNE DFMDPYFPNQ QQEQLIRTNG AARYRSTPSP FFNNSFENGG  60
NYRSFRSPSP EMDSFFADVM KTHENKEPIT HQNNDLLGLQ NSGNCHSSVN GSFSFMNNGS  120
SNGSCLMKQH SSPPGLLSDL MIENEFKNSN NSHNHMNMKY RPPVSGSSIM PPHVSDLGSD  180
FSSDSWNKNT SSDVFKGIGG MDITFSGSET QNGSSRNKLA HHLSLPTTFS EKDSVEKFLH  240
FQGTSVPCKV RAKRGFATHP RSIAERVRRN RISQKMKKLQ DLFPDMDKQT STADMLDMAV  300
DQIKELEKQV KALNYSRAKC RCSGKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547248.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547247.10.0PREDICTED: transcription factor bHLH130-like isoform X1
RefseqXP_010547248.10.0PREDICTED: transcription factor bHLH130-like isoform X2
RefseqXP_010547249.10.0PREDICTED: transcription factor bHLH130-like isoform X2
TrEMBLA0A2H5N9Q13e-71A0A2H5N9Q1_CITUN; Uncharacterized protein
STRINGXP_010547247.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.17e-44bHLH family protein