PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547306.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 264aa    MW: 29905.4 Da    PI: 8.9919
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.68.2e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien  nrqvtfskRr+g+lKKA EL vLCdaevavi+fs++gkl+e+ss
  XP_010547306.1  9 KRIENANNRQVTFSKRRAGLLKKARELAVLCDAEVAVIVFSNSGKLFEFSS 59
                    79***********************************************96 PP
2K-box74.43.2e-25731722100
           K-box   2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     qkssg    e + +   + e++ Lk+ei++L+++q +llG++L+ LslkeLq Le+qL++ l ++R++K++llleq+ee++ ke+++  en++Lr
  XP_010547306.1  73 QKSSGPPpIECKAEVDNCIEVELLKEEISKLREKQSQLLGKGLNGLSLKELQLLEEQLNETLLSVRERKEQLLLEQLEESRLKEQRAMLENETLR 167
                     6666666644555667789**************************************************************************** PP

           K-box  96 kklee 100
                     +++ee
  XP_010547306.1 168 RQVEE 172
                     **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.1E-43160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.941161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-33274IPR002100Transcription factor, MADS-box
CDDcd002654.78E-44276No hitNo description
PRINTSPR004047.6E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.77186176IPR002487Transcription factor, K-box
PfamPF014867.6E-1790170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRGKIEIKR IENANNRQVT FSKRRAGLLK KARELAVLCD AEVAVIVFSN SGKLFEFSSS  60
GMKKTLSRYN KYQKSSGPPP IECKAEVDNC IEVELLKEEI SKLREKQSQL LGKGLNGLSL  120
KELQLLEEQL NETLLSVRER KEQLLLEQLE ESRLKEQRAM LENETLRRQV EELRGLLPSA  180
NLRYFPSYIE CYPVEIKKPP VKDADFGGFN CMAQKTDSDT TLQLGLPGEA EERRKRKEPE  240
KGSSSGDSVL TNTARACIQR ISLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-23188183MEF2 CHIMERA
6byy_B1e-23188183MEF2 CHIMERA
6byy_C1e-23188183MEF2 CHIMERA
6byy_D1e-23188183MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232237RRKRKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547306.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547306.10.0PREDICTED: agamous-like MADS-box protein AGL15 isoform X4
SwissprotQ392951e-109AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLR0FJ291e-112R0FJ29_9BRAS; Uncharacterized protein
STRINGXP_010547302.11e-175(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-64AGAMOUS-like 15