PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010547430.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C3H

Protein Properties

Length: 521aa MW: 57058.8 Da PI: 9.5829

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010547430.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	8.2e-06	472	496	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+++C++f C+ GdrC+F+Hg XP_010547430.1 472 KQKPCMYFGSKRGCRLGDRCTFMHG 496 899***9999**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0053	470	497	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.624	470	498	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-4	471	496	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-5	472	497	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.49E-5	472	497	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MKKLKKSRVS WPPDPLLCQV KLFSSEDCPA EVASSRKSPV PDLPPGFESN LSDIPRLKWR 60 YPSKFVLSPS WRVGAGQEST ERQTQNLRIA KVLEAIYPHR SAIPYRSSVT PDVEGECYDD 120 RKTPIIRLTP IEDEWEAAEK SSQTPLQSDN TMSRQCPLET RPPSSTQGPV HATVSARGAD 180 VSLAVSAGLT ALTKSKEHQS MIDPDLLIKF LSDPKIIQNL ISERIDKPSE AENPPLDTDI 240 TPRHDPKHVH NSAVDRTPQP LPMKQTPFTS PEPPRVSPPR YGNGNSHGGS MSVVPCTSVA 300 IETPLLKPAQ VCQLAPHSLN LQRPPPVFGG VPVSAGAKPS IRHQPGFSTL PMNPNPVEAL 360 PEPNRLVKPQ SHSPFSTMSM NVVQASVGHG PGPRPGPGPK PGFQSGFNLN RVEVPIKQEL 420 GAPPPVKSVD YFKNLIREHG KDNAETTNEY RLQSRGFNTR AGDGNVVEEG KKQKPCMYFG 480 SKRGCRLGDR CTFMHGDGPK LWGSSHMEAE APRAKRPKFG T

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MKKLKKSRVS WPPDPLLCQV KLFSSEDCPA EVASSRKSPV PDLPPGFESN LSDIPRLKWR  60
YPSKFVLSPS WRVGAGQEST ERQTQNLRIA KVLEAIYPHR SAIPYRSSVT PDVEGECYDD  120
RKTPIIRLTP IEDEWEAAEK SSQTPLQSDN TMSRQCPLET RPPSSTQGPV HATVSARGAD  180
VSLAVSAGLT ALTKSKEHQS MIDPDLLIKF LSDPKIIQNL ISERIDKPSE AENPPLDTDI  240
TPRHDPKHVH NSAVDRTPQP LPMKQTPFTS PEPPRVSPPR YGNGNSHGGS MSVVPCTSVA  300
IETPLLKPAQ VCQLAPHSLN LQRPPPVFGG VPVSAGAKPS IRHQPGFSTL PMNPNPVEAL  360
PEPNRLVKPQ SHSPFSTMSM NVVQASVGHG PGPRPGPGPK PGFQSGFNLN RVEVPIKQEL  420
GAPPPVKSVD YFKNLIREHG KDNAETTNEY RLQSRGFNTR AGDGNVVEEG KKQKPCMYFG  480
SKRGCRLGDR CTFMHGDGPK LWGSSHMEAE APRAKRPKFG T

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010547430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010547430.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 45
TrEMBL	V4NGT2	1e-124	V4NGT2_EUTSA; Uncharacterized protein
STRING	XP_010547430.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8704	11	12