PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547446.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 368aa    MW: 40415 Da    PI: 6.392
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.2e-09218265455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++  L++l+P +    +k    a +L + +++++sLq
  XP_010547446.1 218 SHSLAERARREKINARMKLLQDLVPGC----DKIQGTALVLDEIINHVQSLQ 265
                     8*************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.47E-9212269No hitNo description
SuperFamilySSF474593.27E-15212283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-15214282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.71214264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6218265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-8220270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDLTGGFGAR STVRGSCREV TGLDCLQFSD EFRQLPTMPH ENGRSFTALL ELPATQAMDL  60
LHFSGSSCPP VTVDGIGGDF APSLHPFGSL TFPSNTVLMD HTARFSMAAT EQNGDVSAET  120
TSSVPSNSSG NLDRVKDEPA ENDSSQRLVS HPTVESESPS QIQPQTQTQN QNSQTGKRKE  180
REKKVKSSSS AKKTKSSEED EKLPYVHVRA RRGQATDSHS LAERARREKI NARMKLLQDL  240
VPGCDKIQGT ALVLDEIINH VQSLQRQVEL LSMRLAAVNP RIDFNLDSIL ASENGCLMDV  300
NFSGATMPVA WPHVAENGQP YHRHQPPQQW PFDAFHQQQQ GFTPADNFMV GSSSSSSPLH  360
PNHVKMEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547446.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547446.10.0PREDICTED: transcription factor bHLH48-like
SwissprotQ3EAI11e-139BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A178V8Y31e-147A0A178V8Y3_ARATH; Uncharacterized protein
STRINGXP_010547446.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-135bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]