PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547467.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ZF-HD
Protein Properties Length: 251aa    MW: 28206.9 Da    PI: 9.4672
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547467.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.45.3e-3174128459
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                      rY+eC++NhAa +Gg ++DGCgEfmp  gee t++alkCaACgCHR+FHR+ev+ 
  XP_010547467.1  74 SRYRECQRNHAAVTGGLVIDGCGEFMPG-GEEDTPDALKCAACGCHRSFHRKEVDG 128
                     69*************************9.8888*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-1973128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.9E-2874126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-2775126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.15176125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.4E-26171245IPR009057Homeodomain-like
SuperFamilySSF466891.86E-17173245IPR009057Homeodomain-like
TIGRFAMsTIGR015654.9E-25184241IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEFEGKANAV ILSTTPSKTL DHIRRHPPPD PKPEPDPDPD PVSASPPTPP SPPAVSAAQR  60
PSTRSELTAR LLRSRYRECQ RNHAAVTGGL VIDGCGEFMP GGEEDTPDAL KCAACGCHRS  120
FHRKEVDGQD SQTAAYMYAQ RTAPALYCSG SYRAMQTHAM HRTAGIARRS SSSEEMNDEK  180
RSGKKRLRTK INQEQKDKMK EFAERLGWSL QKKDEEEVDK FCSMVNLRRE VFKVWMHNNK  240
QAMKRKLSLP N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-181852421875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547467.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547467.10.0PREDICTED: zinc-finger homeodomain protein 7-like
SwissprotQ9SVL05e-75ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBLA0A078GV381e-75A0A078GV38_BRANA; BnaC07g31930D protein
TrEMBLA0A0D3DDV91e-75A0A0D3DDV9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F8P51e-75A0A3P6F8P5_BRAOL; Uncharacterized protein
STRINGXP_010547467.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138541525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.18e-69homeobox protein 28