PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547504.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LBD
Protein Properties Length: 279aa    MW: 30361.4 Da    PI: 7.3551
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547504.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.22.8e-4371061100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC+++Cv+apyfp +qp+kfa+vhk+FGasnv+kll++l++++reda++sl+yeAear+rdPvyG+ g+i+ lq++l+ql+ +l+
  XP_010547504.1   7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFAYVHKVFGASNVSKLLNHLSPNQREDAVNSLFYEAEARLRDPVYGCGGLISILQHRLKQLQLDLD 101
                     7*********************************************************************************************9 PP

          DUF260  96 llkee 100
                      +k+e
  XP_010547504.1 102 IAKKE 106
                     99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.0316107IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-427104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSSSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAYVH KVFGASNVSK LLNHLSPNQR  60
EDAVNSLFYE AEARLRDPVY GCGGLISILQ HRLKQLQLDL DIAKKELAAC IGPQAMLPIM  120
QPSMAMHHQL AAIGNPSSSP SVMADQHQNM VPAVMAIPTA QPHGQLHIYE AQQLAAAAAM  180
REQHIFRTYG GGHHQNQLNQ SQVENLRFES ASGPVTVTGF NQTSSGATVL SPPSLALCSF  240
DSPSDQFRQQ HEALRFVPTH SAQPKTELEE GSSAIGPSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-4831077111LOB family transfactor Ramosa2.1
5ly0_B1e-4831077111LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547504.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547504.10.0PREDICTED: LOB domain-containing protein 36-like
RefseqXP_010547505.10.0PREDICTED: LOB domain-containing protein 36-like
SwissprotQ9FKZ37e-93LBD36_ARATH; LOB domain-containing protein 36
TrEMBLV4K0196e-97V4K019_EUTSA; Uncharacterized protein
STRINGXP_010547504.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80082441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-93ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]