PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010547515.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HSF

Protein Properties

Length: 242aa MW: 26923.1 Da PI: 4.9035

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010547515.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111	8.6e-35	13	104	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+++++++sw+++g++fvv++ +fa+++Lp +Fkh+nfaSFvRQLn+YgF+kv ++ weF++k+F++g+kell++ XP_010547515.1 13 FLTKTYQLVDDPTTDDVVSWNQDGTAFVVWKIADFARDLLPCFFKHNNFASFVRQLNTYGFRKVVPDK---------WEFANKNFRRGQKELLSE 98 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i r+k XP_010547515.1 99 IWRRKP 104 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.9E-37	5	96	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.8E-55	9	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.63E-32	10	102	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.3E-30	13	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.5E-20	13	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.5E-20	51	63	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	52	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.5E-20	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MAAVGQRSVP APFLTKTYQL VDDPTTDDVV SWNQDGTAFV VWKIADFARD LLPCFFKHNN 60 FASFVRQLNT YGFRKVVPDK WEFANKNFRR GQKELLSEIW RRKPASPVIS AAVKSAGTAP 120 EQSSQSNSGD ELGSTSTSFP DMKNPESVST KMADLYGENE KLRQSNEILS SELALAKKQC 180 DELAAFLSEY MEVGLDQIDQ ILRRRIAGDR GVGNDDDQKL SDNDEGLGGE LKIFGVRLKE 240 GS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-26	2	102	19	129	Heat shock factor protein 1
5d5v_B	4e-26	2	102	19	129	Heat shock factor protein 1
5d5v_D	4e-26	2	102	19	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010547515.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010547515.1	1e-180	PREDICTED: heat shock factor protein HSF24-like
Swissprot	P22335	2e-80	HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBL	A0A2P6RNL9	1e-100	A0A2P6RNL9_ROSCH; Putative transcription factor HSF-type-DNA-binding family
STRING	XP_010547515.1	1e-179	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6101	25	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36990.1	1e-78	heat shock factor 4

Publications ? help Back to Top
Scharf KD, et al. Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF. EMBO J., 1990. 9(13): p. 4495-501 [PMID:2148291]