PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010547547.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 241aa MW: 26153.8 Da PI: 8.1622

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010547547.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	102.9	2.8e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Gavg++++++++l+q+ XP_010547547.1 2 SCNGCRVLRKGCSENCILRPCLqwietAEAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLMWTGNWNLCQT 96 6*******************9999777889************************************************************* PP DUF260 91 kaelall 97 ++e++l+ XP_010547547.1 97 AVETVLR 103 *999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.251	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.0E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIETAE AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLYE ACGRTVNPVN GAVGLMWTGN WNLCQTAVET VLRGGSLRPI PELLIRGGGF 120 GGLPSPTSDE ASEICTEMLD LHKYGAGDRN DYHHCRFSSS RSRSTASPPK RKRLETEQPS 180 SRLNLSLVPN LPPCKEGIRR PETPSMNSEE SVMTSSYCGN AAGERCGHGG GETTKLLNLF 240 V

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010547547.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010547547.1	1e-178	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9SN23	1e-121	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	R0HL69	1e-129	R0HL69_9BRAS; Uncharacterized protein
STRING	XP_010547547.1	1e-178	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-117	LOB domain-containing protein 37