PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547650.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CAMTA
Protein Properties Length: 1037aa    MW: 115954 Da    PI: 5.9408
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547650.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.48.7e-56191362118
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkD +sw+kkkdgktv+E+hekLKvg+v+vl+cyYah+een +fq
  XP_010547650.1  19 LSEaQNRWLRPAEICEILRNYQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDCHSWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENDNFQ 113
                     45559****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhylevk 118
                     rr+yw+Le e+ +iv+vhylevk
  XP_010547650.1 114 RRSYWMLEPEFMHIVFVHYLEVK 136
                     ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143783.33615141IPR005559CG-1 DNA-binding domain
SMARTSM010765.6E-8118136IPR005559CG-1 DNA-binding domain
PfamPF038591.0E-4921135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.9E-5424529IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.8E-15452538IPR014756Immunoglobulin E-set
PfamPF127962.3E-7634712IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.465635717IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.66E-18636746IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.0E-18636746IPR020683Ankyrin repeat-containing domain
CDDcd002047.44E-14641744No hitNo description
PROSITE profilePS500888.71652684IPR002110Ankyrin repeat
SMARTSM002480.0028685714IPR002110Ankyrin repeat
PROSITE profilePS5008811.327685717IPR002110Ankyrin repeat
SuperFamilySSF525401.46E-8854912IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.2861883IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.73863891IPR000048IQ motif, EF-hand binding site
PfamPF006120.0018863882IPR000048IQ motif, EF-hand binding site
SMARTSM000150.28884906IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.413885909IPR000048IQ motif, EF-hand binding site
PfamPF006124.6E-4887906IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1037 aa     Download sequence    Send to blast
MADRGPFGFG PRLDIEQLLS EAQNRWLRPA EICEILRNYQ KFHIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DCHSWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEEND NFQRRSYWML  120
EPEFMHIVFV HYLEVKGNRT STGGIKENSS NSVNGNTSVN IDSTASPTNS FSSLCEDADS  180
GDIHQASTSL QAFPDPKIAI PQIRDMQDAG TSNSYYMDSF SGTREGWTLA PNVGIVSQVQ  240
ENDSQRSVDI PAWGAAAFKD STTRYHNAPC NDPLTQMQPS TSGLMPVPGL ENPLKTQENW  300
QDNLPVPKWP MDMASHTGVG DMDMTAFEQR AHDNFETFSS LLDTQSQQSI GNGLQFLLTS  360
VESEYIPKLN HDDLQYETST SLMLPRKSLL SKEDSLKKVD SFSRWASKEL GEMEDLQMQS  420
SSGGIAWTTV ECETEAAGSS LSPSLSQDQR ITVIDFWPKW GHTDSEVEVM VIGTFLMSKK  480
EVTKYNWSCM FGEVEVPADI LVDGVLCCHA PPHTAGQVPF YITCSDRFAC SEVREFDFLP  540
GSTKNLDGAD VYGASTTEVS LSMRFERLLD HRSPVHERRI FEGVGEKRKQ ISKIMLLKDE  600
KESFSPGTTQ KDSIEHEAKG RVVQDRFEEK LYTWLIHKVT EDGKGPNILD EEGQGVLHFA  660
SALGYDWAIK PILAAGVSIN FRDANGWTAL HWAAFSGREQ TVAVLVSLGA DAGALTDPSP  720
EFPLSKTAAD LASGNGHKGI SGFLAEFSLT SHLEKLTMNK SKENSSADSS GAKVVQTVAE  780
RKTTPSSYGD VPEALSLKDS LTAVCNATQA ADRIHQVFRM QSFQRKQMSQ FGNDESDISD  840
ELAVSFAAAK TGGKSGHHEG AVHAAAVHIQ KKYRGWKKRK EFLFIRQRIV KIQAHVRGHQ  900
VRKQYRTIIW SVGILEKIIL RWRRKGSGLR GFRRDATRQG EDESDVLKEG RKQTEERLEK  960
ALTRVKSMVQ YPEARAQYRR LLTVVEGFRE TEASSSGAKN IDHAEEQEEE AGNAYDEDLL  1020
DMDSLLDDDT FMSIAFG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547650.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547650.10.0PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLD7MR880.0D7MR88_ARALL; Calmodulin-binding protein
STRINGXP_010547650.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]