PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547665.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 413aa    MW: 45921.5 Da    PI: 4.5215
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547665.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.74.1e-4861341129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtd elv++yLk+kv++kkl++ e+i+e+diyk+eP+dLp k  +k+++ +wyfF++r kkya+g rknr+t  gyWk tgkd++vl
  XP_010547665.1   6 LAPGFRFHPTDVELVKYYLKRKVTRKKLRV-EAIAEIDIYKFEPSDLPdKsYLKTGDLKWYFFCPRGKKYASGVRKNRTTGFGYWKITGKDRAVL 99 
                     579***************************.89**************96346777888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     + ++e vg+ ktLv++ g++p+ge+tdWvmheyrle
  XP_010547665.1 100 C-NNEIVGIIKTLVYHCGKSPRGERTDWVMHEYRLE 134
                     *.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-574156IPR003441NAC domain
PROSITE profilePS5100552.7076156IPR003441NAC domain
PfamPF023651.9E-258133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MVKTHLAPGF RFHPTDVELV KYYLKRKVTR KKLRVEAIAE IDIYKFEPSD LPDKSYLKTG  60
DLKWYFFCPR GKKYASGVRK NRTTGFGYWK ITGKDRAVLC NNEIVGIIKT LVYHCGKSPR  120
GERTDWVMHE YRLEDKELAQ MDVAQDAYVL CVLFKKDGPG PRNGAQYGAP FKEEEWSDGE  180
EDEEEDTDNV ASALPSVNVP GPCKETSLIA TSSQSHVRKD FGVGMISESC VSDMVPTVNM  240
PLPPNGADNT PRPSSPLLDF NSSRTLTVAT QNPGDDDIYP MLGFFVDDES FGFGGYSLNE  300
ARHESGVPRD GELPRCLEVD DVFSGLPELN SFYQVPGVAP HGNPYEDIQL FLELGDLAEP  360
LTVPVAQSEN LGDSESICLV QDEFGFFADP SCFEMLSGQS QSQPTQPFSG NSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-44215611168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547665.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547665.10.0PREDICTED: NAC domain-containing protein 82-like
SwissprotQ9FY821e-135NAC82_ARATH; NAC domain-containing protein 82
TrEMBLV4LEM01e-140V4LEM0_EUTSA; Uncharacterized protein
STRINGXP_010547665.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-119NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]