PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547798.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 249aa    MW: 26903.9 Da    PI: 6.8023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547798.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-10159205555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+ +Er RR++i ++++ L++l+P +    +k   Ka +L + ++YI+sLq
  XP_010547798.1 159 HSLAERARREKISERMNVLQDLVPGC----NKLIGKALVLDEIINYIQSLQ 205
                     999**********************9....666*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.10E-10152209No hitNo description
SuperFamilySSF474592.09E-17152220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.555154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-17155218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7159205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-11160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDPPLVSESS FTANPSSYTL SEIWPFPAND GLRSGLRLSI NSGGKAEFFG NKDISAEEST  60
VTEHSGGCGG RKRRDLNSED EPSKMASSSS SGNGLQNELS EKKKRKVSGS ERENGDVARP  120
EGETSSGGGS KAMEQNSKPE PPKDYIHVRA RRGQATDRHS LAERARREKI SERMNVLQDL  180
VPGCNKLIGK ALVLDEIINY IQSLQRQVEF LSMKLEVVNS GIGVGPAGEV FPSGDLGSLP  240
LNVQRNIFG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106KKKRKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547798.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721046e-87AY072104.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
GenBankAY0845786e-87AY084578.1 Arabidopsis thaliana clone 112281 mRNA, complete sequence.
GenBankAY1230236e-87AY123023.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547798.10.0PREDICTED: transcription factor bHLH79-like isoform X1
SwissprotQ9LV171e-116BH079_ARATH; Transcription factor bHLH79
TrEMBLV4KKD61e-119V4KKD6_EUTSA; Uncharacterized protein
STRINGXP_010547798.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.11e-118bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]