PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010547799.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 248aa MW: 26775.8 Da PI: 6.8023

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010547799.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.7	2.7e-10	158	204	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i ++++ L++l+P + +k Ka +L + ++YI+sLq XP_010547799.1 158 HSLAERARREKISERMNVLQDLVPGC----NKLIGKALVLDEIINYIQSLQ 204 999********************9....666***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-17	151	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.05E-10	151	208	No hit	No description
PROSITE profile	PS50888	15.555	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-17	154	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-7	158	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.8E-11	159	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MDPPLVSESS FTANPSSYTL SEIWPFPAND GLRSGLRLSI NSGGKAEFFG NKDISAEEST 60 VTEHSGGCGG RKRRDLNSED EPSKMASSSS SGNGLNELSE KKKRKVSGSE RENGDVARPE 120 GETSSGGGSK AMEQNSKPEP PKDYIHVRAR RGQATDRHSL AERARREKIS ERMNVLQDLV 180 PGCNKLIGKA LVLDEIINYI QSLQRQVEFL SMKLEVVNSG IGVGPAGEVF PSGDLGSLPL 240 NVQRNIFG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	105	KKKRKV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010547799.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010547799.1	1e-180	PREDICTED: transcription factor bHLH79-like isoform X2
Swissprot	Q9LV17	1e-117	BH079_ARATH; Transcription factor bHLH79
TrEMBL	V4KKD6	1e-120	V4KKD6_EUTSA; Uncharacterized protein
STRING	XP_010547798.1	1e-175	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	1e-114	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]