PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547824.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 586aa    MW: 66426.3 Da    PI: 8.5637
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547824.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13390436354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++ + Er+RR riN+++  Lr l+Pk      +K++Ka +L  A++YI++L
  XP_010547824.1 390 SKNIITERNRRYRINQGIYALRALVPKI-----TKMDKAGTLSDAINYINEL 436
                     566789*********************7.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-17128286IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.54E-11385441No hitNo description
PROSITE profilePS5088815.751387436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-15389451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15389450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-11390436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-14393442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MSVFSLSKIW YRLVDDTLFP PGFDSKKLKT LFLSSDNINK SRVGYGCLCT IVYSLNDFLL  60
ADNCCVSGDT AESSLSLSLS LSLSLSLSLP RYILQSKKKE KKRAEKRFKC WIFVVRERER  120
MRGVARVKEL LRPFVDSKDW DFCIIWKLGD DPSRFMEWVD CCCSGGYSGE HIKHENVEEE  180
GEGGEGEQKK GVSMCRDEHK KHPLRTLPCE VLSRFPLFMP LYPGIHGEVV MSKLSRWLLN  240
NQGNGSGLGS SNDVFRTRVL VPVNDGLVEL FSTKLKPVDQ AVVDSIISSC NAFLSDLRIG  300
LKPRPLFEPF LEQTVQGSAN TGVNISFDGS SSGSNPSSET QPPLPNHLEL LYKQEPPPCL  360
LLSSKSKKDI AGRDNGFKSI KKVVKEMGKS KNIITERNRR YRINQGIYAL RALVPKITKM  420
DKAGTLSDAI NYINELHEEK RKLEDELKHM NDMEYIESVA EEIMAKKPDE DPSMAADPAT  480
YQVSSELNRK QNEVNLEVHK ISEREFLIRV SHENKRDGFK RVIEALNSTG LEIINVNFTR  540
LNESVMNILN VKARKDGIEA RKLRDVLFMM ITSDNRRADA NPVKRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101108KRAEKRFK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547824.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547824.10.0PREDICTED: transcription factor bHLH90 isoform X2
SwissprotQ0WNR21e-144BH090_ARATH; Transcription factor bHLH90
TrEMBLV4L7P91e-154V4L7P9_EUTSA; Uncharacterized protein
STRINGXP_010547816.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.11e-138bHLH family protein