PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547827.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 424aa    MW: 46215.6 Da    PI: 4.9962
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547827.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.2e-12264309555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR++i +++  L+el+P++      K +Ka++L + +eY++ Lq
  XP_010547827.1 264 HSIAERLRREKISERMKSLQELVPNS-----CKTDKASMLDEIIEYVRFLQ 309
                     99***********************5.....4******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.84E-13257313No hitNo description
SuperFamilySSF474592.09E-16257320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.964259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16261319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-9264309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-14265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MDESIDHYLS TSPWLDANPV EASPWQYEQQ NQTKPQLAGL CGELSNNGQA FHTETTSTLT  60
MNCTPDALGG NVDYTEKGIG NFNSNLLGNL HNGRIKDEHV VTIPRFHSYS YEALHGSKLD  120
ASEQFPSIFD GTSLASGSVG CNSIKDFDVS FGETLPPFCD GYLLPDTVGG RDDMDTLVES  180
RFVNVEKLLQ VNDFSESITT KDRQIMQGEG LPSLATESTI EEKKTMTTGL PQAVVETAYA  240
PSGGCNVSER PRVRARRGQA TDPHSIAERL RREKISERMK SLQELVPNSC KTDKASMLDE  300
IIEYVRFLQL QVKVLSMSRL GAAEAVVPLV TERSKNASVP FPSSLVGHEF SPSSDQSALE  360
KEIVRLMETN VSKAVQYLQS RGLCLMPVPL ASAISKAKAH ERDNNSAGRA QNNSSSSGSN  420
GSLS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547827.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547827.10.0PREDICTED: uncharacterized protein LOC104819452
STRINGXP_010547827.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16266914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-60LJRHL1-like 3