PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547838.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 267aa    MW: 29829.4 Da    PI: 4.9148
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547838.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.42.9e-163374142
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    ++ie k  r+v fskRr+g+  KA+EL+ LCd+++a+++  +
  XP_010547838.1 33 EKIEKKESRSVAFSKRREGLYRKASELCLLCDTRIAILVTPP 74
                    579***********************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.2922577IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-152584IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-102747IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.14E-1927107IPR002100Transcription factor, MADS-box
CDDcd002669.47E-2527104No hitNo description
PfamPF003191.5E-163477IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-104762IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-106283IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MNSTQLCPLT KSLSRNLSEN STMGGRKRKI PMEKIEKKES RSVAFSKRRE GLYRKASELC  60
LLCDTRIAIL VTPPSAKSNV SFYSFGHSSV DDVVDAFLHN RPPTLSDDHA LSRIRAAKNK  120
DRLAGKKPSS GLGFRWEEDG FEETDNIRDL EVAIYEISEL MNSVRLRQNV MKNQRPRLVE  180
TTKLGESSVQ GLDNDGGKHD ETLAGDLAPQ VSDQPIHTEA IANSDICFEE LGEEPRMGEA  240
SLLSENDLKD PVDGINFDDF ADFSFDF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547838.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547838.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLD7KW736e-39D7KW73_ARALL; Uncharacterized protein (Fragment)
STRINGXP_010547838.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.18e-43AGAMOUS-like 55