PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548069.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TALE
Protein Properties Length: 582aa    MW: 63788.3 Da    PI: 6.3103
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548069.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.7e-093664031954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  XP_010548069.1 366 FEHflHPYPKDSDKIMLARQTGLSRSQVSNWFINARVR 403
                     664459******************************88 PP
2BELL1321.9e-42228299172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai++qi
  XP_010548069.1 228 ERQELQSKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAISGQI 299
                     79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.8E-68158297IPR006563POX domain
PfamPF075261.6E-51164296IPR006563POX domain
PROSITE profilePS5007111.872344407IPR001356Homeobox domain
SMARTSM003891.8E-9347411IPR001356Homeobox domain
CDDcd000867.73E-13347408No hitNo description
SuperFamilySSF466893.64E-17348414IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27350413IPR009057Homeodomain-like
PfamPF059202.3E-18364403IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MATYYTSGSS NDRENLPSSF PESQFLPGSA MMYVNPAVSY SDAVAIATCS VGEGTEDTVS  60
ASQERQVLSG YGGSSQIQEF GYWKDHDGIH PMSGGTGILR TGQGLSLSLG SQILPSALHQ  120
MNNQSVPYRG NPNLAEQTRS YEYAEQVFSG GNPNQYSGGS TRTIPNSKYL KAAQQLLDEV  180
VNVRKALKPF QPDGEKNDEH SGQKQVGSSK EGSGDTNQNP PGDVSQAERQ ELQSKLTKLL  240
SMLDEVDRRY KQYYHQMQIV VSSFDVIAGC GAAKPYTALA LQTISRHFRC LRDAISGQIF  300
AARKSLGDQD GCDSRGVGIS RLRYVDQQLR QQRTLQQLGV MQQPHAWRPQ RGLPENSVLI  360
LRAWLFEHFL HPYPKDSDKI MLARQTGLSR SQVSNWFINA RVRLWKPMVE EMYKEEFTEV  420
MENESNSSSE NTPKTGGADE TRPHSDDQAQ DSITQDKLHG SRADNTFQTG YGQGSDAGGA  480
NVFHDDPMIH VDQMGSGGRF VATASSSYNV MEMGRFGSGG GSGVSLTLGL QNSDGRNAQP  540
VAGGFSGMRG DEIYGSTTHG AEFEYININP GHRQNRLSHS QL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-15353410158Homeobox protein Meis1
4xrs_B2e-15353410158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548069.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548069.10.0PREDICTED: BEL1-like homeodomain protein 6
RefseqXP_019058751.10.0PREDICTED: BEL1-like homeodomain protein 6
SwissprotO656850.0BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLV4MLP30.0V4MLP3_EUTSA; Uncharacterized protein
STRINGXP_010548069.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-168BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]