PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548116.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 625aa MW: 70637.2 Da PI: 4.7414

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548116.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.5	5e-13	303	348	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + ++ErrRR+++N+++ +Lr+l+Pk + Kl+ a+iLe A++++k+Lq XP_010548116.1 303 NLMAERRRRKKLNDRLYTLRSLVPKiS------KLDRASILEDAINFVKELQ 348 5589*******************66......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.7E-18	10	161	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	16.202	298	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.43E-13	300	350	No hit	No description
SuperFamily	SSF47459	1.83E-16	301	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-10	303	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-15	304	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-15	305	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048657	Biological Process	anther wall tapetum cell differentiation
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 625 aa Download sequence Send to blast
MESTIQNLLE KLRSLVGTRG WDYCVLWKLS DDQRFVKWLG CCCGGAEEII SNFDGNDNGG 60 EGFCFSSGVP SRCRDVMFHH PRTKSCELLA NLPVSIPLES GIHTETLVSN QTAWLNFSDR 120 SEPEFLQETT CTRVLIPMPG GLVELFVTRQ VSEDQHIVDF VMRECNFLLD HTSIGALSMN 180 MMGAEKLGEY EVEHIKLKND YQELGFLPEN KHMGMNPFNL VVAEDEIIGM EALHNSMGVG 240 AVDMHNVEGC DPSLQVKEQD DKETFSHENG RLELGSDCSD QMDDEDDAKF KQEKIGKGSQ 300 AKNLMAERRR RKKLNDRLYT LRSLVPKISK LDRASILEDA INFVKELQNE AKELQEELED 360 NLDTNDGSNR HNGDVAIGGN NDLVKGFHSG LSCNTTNVPN LKQDMDPNQS SNEKEQKMEP 420 QVDVAQVDRK EFFVKVICEY KSGIFTKLIE AMDSLGFEVT NANTTRLLGL VSNVFKVKRK 480 DSEMVQAEHV RDSLLEITRN TSRGWHGGGD DDDHIGFHWA EDGFEETANT QDLKVTIDEI 540 SELMNNVRLR QNDKKNQRPR LLEKRKLGES TVQDLEIHGG KHDDTLVGNF ARKDSEKPNR 600 ISENSDIFTE AMANYLKHVI NVSNI

Sequence ? help Back to Top

Protein Sequence Length: 625 aa Download sequence Send to blast

MESTIQNLLE KLRSLVGTRG WDYCVLWKLS DDQRFVKWLG CCCGGAEEII SNFDGNDNGG  60
EGFCFSSGVP SRCRDVMFHH PRTKSCELLA NLPVSIPLES GIHTETLVSN QTAWLNFSDR  120
SEPEFLQETT CTRVLIPMPG GLVELFVTRQ VSEDQHIVDF VMRECNFLLD HTSIGALSMN  180
MMGAEKLGEY EVEHIKLKND YQELGFLPEN KHMGMNPFNL VVAEDEIIGM EALHNSMGVG  240
AVDMHNVEGC DPSLQVKEQD DKETFSHENG RLELGSDCSD QMDDEDDAKF KQEKIGKGSQ  300
AKNLMAERRR RKKLNDRLYT LRSLVPKISK LDRASILEDA INFVKELQNE AKELQEELED  360
NLDTNDGSNR HNGDVAIGGN NDLVKGFHSG LSCNTTNVPN LKQDMDPNQS SNEKEQKMEP  420
QVDVAQVDRK EFFVKVICEY KSGIFTKLIE AMDSLGFEVT NANTTRLLGL VSNVFKVKRK  480
DSEMVQAEHV RDSLLEITRN TSRGWHGGGD DDDHIGFHWA EDGFEETANT QDLKVTIDEI  540
SELMNNVRLR QNDKKNQRPR LLEKRKLGES TVQDLEIHGG KHDDTLVGNF ARKDSEKPNR  600
ISENSDIFTE AMANYLKHVI NVSNI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	306	313	ERRRRKKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Plays a crucial role in tapetum development. Required for male fertility and pollen differentiation, especially during the post-meiotic transcriptional regulation of microspore development within the developing anther (PubMed:12535353). Binds E-box regions in the AHL16/TEK promoter. {ECO:0000269\|PubMed:12535353, ECO:0000269\|PubMed:24804694}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548116.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548116.1	0.0	PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
Swissprot	Q9ZVX2	0.0	AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBL	V4LJU2	0.0	V4LJU2_EUTSA; Uncharacterized protein
STRING	XP_010548115.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Xu J, et al. ABORTED MICROSPORES Acts as a Master Regulator of Pollen Wall Formation in Arabidopsis. Plant Cell, 2014. 26(4): p. 1544-1556 [PMID:24781116] Qian H, et al. Trace concentrations of imazethapyr (IM) affect floral organs development and reproduction in Arabidopsis thaliana: IM-induced inhibition of key genes regulating anther and pollen biosynthesis. Ecotoxicology, 2015. 24(1): p. 163-71 [PMID:25348600] Xiong SX, et al. The transcription factors MS188 and AMS form a complex to activate the expression of CYP703A2 for sporopollenin biosynthesis in Arabidopsis thaliana. Plant J., 2016. 88(6): p. 936-946 [PMID:27460657] Ferguson AC, et al. Biphasic regulation of the transcription factor ABORTED MICROSPORES (AMS) is essential for tapetum and pollen development in Arabidopsis. New Phytol., 2017. 213(2): p. 778-790 [PMID:27787905] Lou Y, et al. Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana. New Phytol., 2018. 217(1): p. 378-391 [PMID:28940573] Bi H,Fan W,Zhang P C4 Protein of Sweet Potato Leaf Curl Virus Regulates Brassinosteroid Signaling Pathway through Interaction with AtBIN2 and Affects Male Fertility in Arabidopsis. Front Plant Sci, 2017. 8: p. 1689 [PMID:29021807]