PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548292.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 277aa MW: 30187.8 Da PI: 8.9337

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548292.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.2	1.9e-10	158	205	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq XP_010548292.1 158 SHSLAERARREKISERMKILQDLVPGC----NKVFGKALVLDEIINYIQSLQ 205 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.45E-9	152	209	No hit	No description
SuperFamily	SSF47459	8.51E-18	152	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-18	154	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.631	154	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.1E-8	158	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-10	160	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MDPGGMMNGG GPCNTSEIWQ FPRNGAPPMN SSIRGDGVPF DGPNLAQQFA GSNPNGTTTC 60 GGGPARLRNA LPPQARVARK RREATEDEAA KVVSTSNGNG AKDDDSKRQK TGRCGDVGHG 120 WKTEEETAGK GVEEKKQTAE SPKDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL 180 VPGCNKVFGK ALVLDEIINY IQSLQRQVEF LSMKLEAVNS RIAPGLDVLP PKELAQQQFE 240 SSGLRSGLQP PRDYSRGESP EWLHLHMQLG GGFERTS

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269\|PubMed:16902407}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548292.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269\|PubMed:16902407}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548292.1	0.0	PREDICTED: transcription factor BPE isoform X3
Swissprot	Q0JXE7	8e-84	BPE_ARATH; Transcription factor BPE
TrEMBL	V4KDL1	1e-114	V4KDL1_EUTSA; Uncharacterized protein
STRING	XP_010548267.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	4e-93	BIG PETAL P

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]