PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548305.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

SRS

Protein Properties

Length: 229aa MW: 24307.8 Da PI: 7.7803

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548305.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	105	1.3e-32	27	81	3	57
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqla 57 s +sC+dCGnqakk+Cah+RCRtCCksrgfdC thv+stWvp+a+rrerqqql XP_010548305.1 27 SVMISCRDCGNQAKKGCAHMRCRTCCKSRGFDCPTHVRSTWVPVARRRERQQQLG 81 66789***********************************************986 PP
2	DUF702	87.7	2.6e-27	101	157	98	154
DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + + +P+ev+seavfrcvr+s++ddg+ ++aYqtav+i+GhvfkGiLydqG+e+ XP_010548305.1 101 LDMGEAAFPAEVNSEAVFRCVRMSGIDDGDGQYAYQTAVNISGHVFKGILYDQGPES 157 4566777************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.3E-55	30	156	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.5E-27	31	73	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.3E-29	107	155	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MQQQQQSLDL YPDGQIDHSD LATSSRSVMI SCRDCGNQAK KGCAHMRCRT CCKSRGFDCP 60 THVRSTWVPV ARRRERQQQL GGGGGANIPK RPRDTPSTGT LDMGEAAFPA EVNSEAVFRC 120 VRMSGIDDGD GQYAYQTAVN ISGHVFKGIL YDQGPESSHN ISGGSAGSDH QSSSAGNPLN 180 PAAAAGGASS GHAVGPSPMF VDPSAYYNPG NLSMFTPAGT QFYHHNPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548305.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548305.1	1e-171	PREDICTED: LOW QUALITY PROTEIN: protein SHI RELATED SEQUENCE 2
Swissprot	O65517	2e-84	SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBL	V4ME11	1e-95	V4ME11_EUTSA; Uncharacterized protein
STRING	XP_010548305.1	1e-170	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13648	17	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36260.1	6e-75	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]