PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548348.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 562aa    MW: 60948.8 Da    PI: 5.3498
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.41.3e-931885612374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +e L++++++v+s++l+laq +Larl+++ +sp+g+p++R+a+yf+eALa+ l++     +   p++ +s+++ ++++ a+k fs +sP++ fsh
  XP_010548348.1 188 IEDLIRVVDCVDSDELQLAQVVLARLNQRlRSPSGRPLKRAAFYFKEALATVLSG-----STRNPTRLSSWSDIVHRIRAYKEFSGISPVPLFSH 277
                     678*************************99*************************.....6667999999999********************** PP

            GRAS  96 ltaNqaIleavege.............ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                     +t NqaIl++++ +               vH++Df+i+ G+Q+++L++++a+++  +   lR+T+v++++   + e++ ++e+L+ fA+ l+++f
  XP_010548348.1 278 FTVNQAILDSLNWQssslsvaaastavPFVHVVDFEIGFGGQYASLMREIAEKSsVSGGFLRVTAVVPEN--YAVETRLVKENLSLFAADLKIRF 370
                     *********998776677777777666678***********************955556*********66..9999******************* PP

            GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalf 268
                     ++++++++++e+l+++++r+ +gE ++V l+  ++r l       s ++ +++ ++++sPkvvv+v+ e  +++ +++sF ++f+  le+y++++
  XP_010548348.1 371 QIEFVLVRTFEMLSFKAIRFVEGERTVVLLSPTIFRHL-------SGISGFIHDLRRVSPKVVVFVDGEgwTETsGAGSFRREFVGGLEFYTMVL 458
                     *************************************9.......33557*******************654555778***************** PP

            GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                     +sl+a +p+ +++++ +E+++l+++i+++v ++ a+   rh   ++Wre+l +aG++p+pls++a  qa++ll+k ++ g++v +++++lvl+W+
  XP_010548348.1 459 ESLDAAVPPGESAKKIIEAFILQPRITEAVEAAAAR---RHAGEMTWREALCAAGMRPMPLSQFADFQAECLLEKAHVGGFHVAKRQAELVLCWH 550
                     *********************************999...9******************************************************* PP

            GRAS 364 drpLvsvSaWr 374
                     +r+Lv++SaWr
  XP_010548348.1 551 GRALVATSAWR 561
                     **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.41161541IPR005202Transcription factor GRAS
PfamPF035144.7E-91188561IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MRVPSSTPQD NQPSDSKAVS YNDTTTTTNL INNNNSSVAT VTAGGGLGFN EPTSVLDLRG  60
SPSPAAAAAD KPPVAVAGEV SGGGGTTGQV SEQFPLDEHV MRSMDWDSIM RELELDDDSA  120
PALKSSFTTA AIPTHYGADS QLPSFPDQLH PADFESSEVY LGHQIGGGHG LNSVDVSDGF  180
VNGGFDFIED LIRVVDCVDS DELQLAQVVL ARLNQRLRSP SGRPLKRAAF YFKEALATVL  240
SGSTRNPTRL SSWSDIVHRI RAYKEFSGIS PVPLFSHFTV NQAILDSLNW QSSSLSVAAA  300
STAVPFVHVV DFEIGFGGQY ASLMREIAEK SSVSGGFLRV TAVVPENYAV ETRLVKENLS  360
LFAADLKIRF QIEFVLVRTF EMLSFKAIRF VEGERTVVLL SPTIFRHLSG ISGFIHDLRR  420
VSPKVVVFVD GEGWTETSGA GSFRREFVGG LEFYTMVLES LDAAVPPGES AKKIIEAFIL  480
QPRITEAVEA AAARRHAGEM TWREALCAAG MRPMPLSQFA DFQAECLLEK AHVGGFHVAK  540
RQAELVLCWH GRALVATSAW RF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-2419356024377Protein SCARECROW
5b3h_D6e-2419356024377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548348.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548348.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1J3DDU30.0A0A1J3DDU3_NOCCA; Scarecrow-like protein 15 (Fragment)
STRINGXP_010548348.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]