PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548355.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 206aa    MW: 23712.6 Da    PI: 5.4891
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548355.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.8e-1950103457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     ++++++eq++ Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa+ k+
  XP_010548355.1  50 KRKLSEEQVNMLEMSFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARFKN 103
                     45899**********************************************995 PP
2HD-ZIP_I/II117.76.6e-3849140293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +kr+ls+eqv++LE+sF +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE ++++Lk+ ++++  e++rLe+ev eL+e+l+e
  XP_010548355.1  49 RKRKLSEEQVNMLEMSFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARFKNKKLEDEFSKLKDLHENVLVEKCRLESEVIELKEQLQE 140
                     8****************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.79544104IPR001356Homeobox domain
SMARTSM003891.7E-1847108IPR001356Homeobox domain
SuperFamilySSF466893.05E-1748110IPR009057Homeodomain-like
CDDcd000861.12E-1549105No hitNo description
PfamPF000462.4E-1650102IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-1951109IPR009057Homeodomain-like
PRINTSPR000311.3E-57584IPR000047Helix-turn-helix motif
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PRINTSPR000311.3E-584100IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDDHMALASQ LYPGAFTQIA PQQGEPRRRR RRRKNKANGE GSINGGTMRK RKLSEEQVNM  60
LEMSFGNEHK LESERKDRLA SELGLDPRQV AVWFQNRRAR FKNKKLEDEF SKLKDLHENV  120
LVEKCRLESE VIELKEQLQE AEREIQRLAE RAEGGSSNSP TTSSVSVEAN DAPFLGDYEV  180
DDSCFDLIYP PQNGYTAGIE WMTMYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12632RRRRRRR
22733RRRRRRK
33151RRKNKANGEGSINGGTMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548355.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548355.11e-153PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232081e-86ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLR0F8R47e-86R0F8R4_9BRAS; Uncharacterized protein
STRINGXP_010548355.11e-152(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-83homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]