PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548380.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 253aa MW: 28016.7 Da PI: 5.0291

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548380.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129	2.1e-40	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaC++ r kC+++C++apyfp + p++fa+vh++FGasn+ k+l++lp e+r+da++sl+yeA+ r++dPvyG+vg+i lqq+l+q++ +l+ XP_010548380.1 5 PCAACRLRRCKCTPECIFAPYFPPNLPQRFAIVHRVFGASNIAKILNELPVEHRQDAVNSLFYEAHTRIQDPVYGCVGLIAYLQQRLKQVNRDLV 99 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++k+e XP_010548380.1 100 SAKTE 104 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.189	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-39	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MSANPCAACR LRRCKCTPEC IFAPYFPPNL PQRFAIVHRV FGASNIAKIL NELPVEHRQD 60 AVNSLFYEAH TRIQDPVYGC VGLIAYLQQR LKQVNRDLVS AKTELAYQLE VAVNSAVPYM 120 PVMGNPPLPN FTAVPYGWVP AMGMQQQQQQ QQGQHLTEFD MQRMEEMFLN RGEQGNVGGY 180 GIDVDGAVTA TGFNQMDAAG PSLALGFYSD AAYQTGQEPG QEHGIDPYQL QTQLVLQPPT 240 PQDQTPRGEA ADR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-40	5	105	11	111	LOB family transfactor Ramosa2.1
5ly0_B	6e-40	5	105	11	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548380.1	0.0	PREDICTED: LOB domain-containing protein 10-like
Swissprot	O64836	2e-73	LBD10_ARATH; LOB domain-containing protein 10
TrEMBL	D7LG10	8e-78	D7LG10_ARALL; LOB domain family protein
STRING	XP_010548380.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23660.2	9e-69	LOB domain-containing protein 10

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]