PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548426.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 256aa    MW: 27447.4 Da    PI: 10.3952
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548426.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.2e-31180237359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+a+dp+++++tYeg+H h+
  XP_010548426.1 180 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAADDPSMLIVTYEGDHGHS 237
                     99************************988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.9E-15130176IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.1E-33166239IPR003657WRKY domain
PROSITE profilePS5081131.536173239IPR003657WRKY domain
SuperFamilySSF1182904.18E-27176239IPR003657WRKY domain
SMARTSM007741.8E-36178238IPR003657WRKY domain
PfamPF031061.0E-26180236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MSPESIDSNQ PSSSSDLDAA CKTTAGAAVS KFRRVVSLIG RTRTGHARFR RAPVQKPEPE  60
TVPFHAPPLP PPPEIVSTPL CGRKGSFSSF KRIDFSLLSS VTTESETAPF RIQSSSLKPL  120
SSSSSPISMK RKCSSEGIVA GKCASASSGL CHCSKKRKLK QKRVIRVPAI SAKMTDIPPD  180
DYSWRKYGQK PIKGSPHPRG YYKCSSVRGC PARKHVERAA DDPSMLIVTY EGDHGHSLPA  240
AEVAGTAVAG LILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-23166239274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548426.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010531258.11e-140PREDICTED: probable WRKY transcription factor 15
SwissprotO221761e-107WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBLR0HTZ81e-109R0HTZ8_9BRAS; Uncharacterized protein
STRINGXP_010548426.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.18e-88WRKY DNA-binding protein 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Liu F, et al.
    Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection.
    Plant Biotechnol. J., 2018. 16(4): p. 911-925
    [PMID:28929638]