PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548502.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 345aa MW: 35569.4 Da PI: 7.1294

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548502.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	4e-12	158	203	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_010548502.1 158 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 203 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.06E-13	151	207	No hit	No description
SuperFamily	SSF47459	7.85E-17	151	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.282	153	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-16	155	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-9	158	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-13	159	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MNSSSLLTPS SSSSSHIQTP ANFDHEDFLD QIFSSSAPWS SVVDDGGAPP SSDGGFQQPI 60 MMMPLSSTLP NDVVDGSVQA LYNGFAGSLL SPTNQSLPFH LPQGSGGGMM SQGQGLAXRR 120 RRPQASTPTA TGGDTAAAAP SQAKPKVRAR RGQATDPHSI AERLRRERIA ERMKSLQELV 180 PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAASV SSQISEGGGG DRAQPGGSTA 240 PSSGGGDSLS MTEHQVAKLM EEDMGSAMQY LQGKGLCLMP ISLATAISTA TCHSRNPLLA 300 GAGDCRPSSP NASIMTVQST STTATANGNG NGVGAGKDTA SVTKP

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MNSSSLLTPS SSSSSHIQTP ANFDHEDFLD QIFSSSAPWS SVVDDGGAPP SSDGGFQQPI  60
MMMPLSSTLP NDVVDGSVQA LYNGFAGSLL SPTNQSLPFH LPQGSGGGMM SQGQGLAXRR  120
RRPQASTPTA TGGDTAAAAP SQAKPKVRAR RGQATDPHSI AERLRRERIA ERMKSLQELV  180
PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAASV SSQISEGGGG DRAQPGGSTA  240
PSSGGGDSLS MTEHQVAKLM EEDMGSAMQY LQGKGLCLMP ISLATAISTA TCHSRNPLLA  300
GAGDCRPSSP NASIMTVQST STTATANGNG NGVGAGKDTA SVTKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	167	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548502.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493711	3e-77	AB493711.1 Arabidopsis thaliana At4g30980 mRNA for hypothetical protein, partial cds, clone: RAAt4g30980.
GenBank	AF488601	3e-77	AF488601.1 Arabidopsis thaliana clone bHLH069 putative bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548502.1	0.0	PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH66
Swissprot	Q9ZUG9	1e-130	BH066_ARATH; Transcription factor bHLH66
TrEMBL	R0HCZ6	1e-146	R0HCZ6_9BRAS; Uncharacterized protein
STRING	XP_010548502.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3042	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	3e-95	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]