PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548590.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 373aa MW: 41599.8 Da PI: 5.8052

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548590.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.4	3.5e-10	224	272	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq XP_010548590.1 224 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 272 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.64E-11	219	276	No hit	No description
SuperFamily	SSF47459	5.37E-17	219	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.485	221	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	222	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-7	224	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-10	227	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MGGEDGEMGF KHGDETGVEM TSMPLYAKVD PFFPSADWDP VVSAMVSSNG FSSSHYPSLV 60 MENPGMSGFA HYQTGSGSSY ADMSASLLPY GNVPDCNRIS HRLGSDKKGG SEGRLMKSGE 120 VHEDHQVSGD TVLGASTCRK RRQPDSEMVP SSRWNKKAVE EIRKDDRMEE DQSQKKMESE 180 RNMFEDSGGK TPTKEMMNEE NSQSGEAPKE NYIHVRARRG QATNSHSLAE RVRREKISER 240 MRLLQELVPG CNKITGKAVM LDEIINYVQS LQQQVEFLSM KLATVNPELN VDIDRVLAKD 300 ILLPRDRNIP MLGMNLHHPY GAMPNIPTMH PQFSPLSQTA LDTELQSLYQ MGFVPNSTDI 360 NSFPPNGRLK PEI

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MGGEDGEMGF KHGDETGVEM TSMPLYAKVD PFFPSADWDP VVSAMVSSNG FSSSHYPSLV  60
MENPGMSGFA HYQTGSGSSY ADMSASLLPY GNVPDCNRIS HRLGSDKKGG SEGRLMKSGE  120
VHEDHQVSGD TVLGASTCRK RRQPDSEMVP SSRWNKKAVE EIRKDDRMEE DQSQKKMESE  180
RNMFEDSGGK TPTKEMMNEE NSQSGEAPKE NYIHVRARRG QATNSHSLAE RVRREKISER  240
MRLLQELVPG CNKITGKAVM LDEIINYVQS LQQQVEFLSM KLATVNPELN VDIDRVLAKD  300
ILLPRDRNIP MLGMNLHHPY GAMPNIPTMH PQFSPLSQTA LDTELQSLYQ MGFVPNSTDI  360
NSFPPNGRLK PEI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00135	DAP	Transfer from AT1G10120	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548597.1	0.0	PREDICTED: transcription factor bHLH74-like
Swissprot	Q6NKN9	1e-162	BH074_ARATH; Transcription factor bHLH74
TrEMBL	V4L7V0	1e-163	V4L7V0_EUTSA; Uncharacterized protein
STRING	XP_010548590.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5196	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	1e-165	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]