PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548649.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 245aa    MW: 27755.1 Da    PI: 4.7901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548649.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-115798854
                    HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     Er+RR+r+N+++  Lr+++P+ +      Kl+Ka++ +  + YI +L
  XP_010548649.1 57 SERNRRHRLNQRLLALRSVVPNiS------KLDKASVIRDSIAYIEEL 98
                    6*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4344998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.63E-1252103No hitNo description
SuperFamilySSF474595.37E-1654117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-1355104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-1555115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-85698IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MENFGDEYKN YWETTMFFQN EELEYDSWAF EEALSGSGES SSPDGAATSP ASKNVLSERN  60
RRHRLNQRLL ALRSVVPNIS KLDKASVIRD SIAYIEELRE QEKRLEAEIR ELESLASSYR  120
NPTNGYNDNY ALSYQYHQEL LPSGKTKARS SPIEILELKV TCMGEKTGVV CITCSKKRDT  180
MVRLCEVFES LNLKIITANI SSFSGRLSNT LFLEVEEEEG AILEAKIHTA IAAFNDSRYG  240
SPMSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548649.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548649.10.0PREDICTED: transcription factor bHLH27-like
SwissprotQ700E38e-99BH027_ARATH; Transcription factor bHLH27
TrEMBLR0F7Y51e-107R0F7Y5_9BRAS; Uncharacterized protein
STRINGXP_010548649.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-79bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]