PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548650.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 169aa    MW: 18968.4 Da    PI: 4.9081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548650.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.52.1e-075780830
                    HHHHHHHHHHHHHHHHHCTSCC.C CS
             HLH  8 rErrRRdriNsafeeLrellPk.a 30
                     Er+RR+r+N+++  Lr+++P+ +
  XP_010548650.1 57 SERNRRHRLNQRLLALRSVVPNiS 80
                    6********************944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-74283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.31249118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-55281No hitNo description
Gene3DG3DSA:4.10.280.102.7E-55581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-55680IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MENFGDEYKN YWETTMFFQN EELEYDSWAF EEALSGSGES SSPDGAATSP ASKNVLSERN  60
RRHRLNQRLL ALRSVVPNIS KLKVTCMGEK TGVVCITCSK KRDTMVRLCE VFESLNLKII  120
TANISSFSGR LSNTLFLEVE EEEGAILEAK IHTAIAAFND SRYGSPMSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027356224.17e-58transcription factor bHLH35-like isoform X2
SwissprotQ700E37e-43BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A022PVD92e-54A0A022PVD9_ERYGU; Uncharacterized protein
STRINGXP_010548649.12e-56(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.21e-30bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]