PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548673.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 262aa MW: 29710.3 Da PI: 8.3064

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548673.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28	4e-09	70	122	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ hn+ Er RR ++ ++ L +llP + skK s i +A +I +Lq XP_010548673.1 70 KKQEHNAKERLRRMKLHASYLALGTLLPDsP---ASKKWSAPVIIDRALTCIPELQ 122 6899***********************66...9999************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-12	68	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.693	69	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.50E-7	70	126	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.3E-10	70	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-5	70	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-5	75	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MNHHHHHQEH VASDHHLQNK TTSETAAHHQ ETRGRGRGKE VAAVVADDEH EHEHEHDERD 60 HEEDGSSCAK KQEHNAKERL RRMKLHASYL ALGTLLPDSP ASKKWSAPVI IDRALTCIPE 120 LQNEVEHLTL RKRQILTAIE TGKKKKLSDK GKSSEQGSDR AVPMVSVHDL GRDGEILVQI 180 CVKNDERNHQ DRFGDLLHAI ESQGMGILSS SSAALVSSDQ CILSHHLHVK FQHGKGKKNV 240 GFRCEAFRDR FRFYRVRIGV RV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	145	RKRQILTAIETGKKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548673.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548673.1	0.0	PREDICTED: uncharacterized protein LOC104820026 isoform X2
Swissprot	F4I8F9	5e-36	BH160_ARATH; Transcription factor bHLH160
TrEMBL	A0A1J3J7M1	2e-47	A0A1J3J7M1_NOCCA; Transcription factor ORG2
STRING	XP_010548672.1	1e-149	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	4e-31	bHLH family protein

Publications ? help Back to Top
Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014]