PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548674.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 254aa MW: 28619 Da PI: 6.988

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548674.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.2e-09	70	123	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ hn+ Er RR ++ ++ L +llP + a++kK s i +A +I +Lq XP_010548674.1 70 KKQEHNAKERLRRMKLHASYLALGTLLPDsP--ASKKKWSAPVIIDRALTCIPELQ 123 6899***********************66..78888************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.71E-11	63	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.636	69	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-5	70	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-9	70	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.66E-5	70	127	No hit	No description
SMART	SM00353	5.6E-5	75	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MNHHHHHQEH VASDHHLQNK TTSETAAHHQ ETRGRGRGKE VAAVVADDEH EHEHEHDERD 60 HEEDGSSCAK KQEHNAKERL RRMKLHASYL ALGTLLPDSP ASKKKWSAPV IIDRALTCIP 120 ELQNEVEHLT LRKRQILTAI ETGKKKKLSD KGKSSEQGSD RAVPMVSVHD LGRDGEILVQ 180 ICVKNDERNH QDRFGDLLHA IESQGMGILS SSSAALVSSD QCILSHHLHV KMHEDLCRGD 240 YITVMREKII SSLT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	146	RKRQILTAIETGKKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548674.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548674.1	0.0	PREDICTED: uncharacterized protein LOC104820026 isoform X3
Swissprot	F4I8F9	1e-45	BH160_ARATH; Transcription factor bHLH160
TrEMBL	A0A1J3J7M1	1e-56	A0A1J3J7M1_NOCCA; Transcription factor ORG2
STRING	XP_010548672.1	1e-166	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	1e-40	bHLH family protein

Publications ? help Back to Top
Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014]