PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548675.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 243aa MW: 27574.8 Da PI: 8.4102

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548675.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20	1.3e-06	70	111	1	32
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC............ CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas..........k 32 +++ hn+ Er RR ++ ++ L +llP ++ XP_010548675.1 70 KKQEHNAKERLRRMKLHASYLALGTLLPDSPasknevehltL 111 6899*************************7435555555550 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.14E-6	63	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	8.543	69	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.8E-5	70	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MNHHHHHQEH VASDHHLQNK TTSETAAHHQ ETRGRGRGKE VAAVVADDEH EHEHEHDERD 60 HEEDGSSCAK KQEHNAKERL RRMKLHASYL ALGTLLPDSP ASKNEVEHLT LRKRQILTAI 120 ETGKKKKLSD KGKSSEQGSD RAVPMVSVHD LGRDGEILVQ ICVKNDERNH QDRFGDLLHA 180 IESQGMGILS SSSAALVSSD QCILSHHLHV KFQHGKGKKN VGFRCEAFRD RFRFYRVRIG 240 VRV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	126	RKRQILTAIETGKKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548675.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548675.1	1e-177	PREDICTED: uncharacterized protein LOC104820026 isoform X4
STRING	XP_010548672.1	1e-131	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	3e-22	bHLH family protein