PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548687.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 363aa    MW: 40708.3 Da    PI: 7.4997
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548687.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.3e-07125144626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C++f++ G C+ Gd C FaHg
  XP_010548687.1 125 CPDFRK-GGCRKGDACEFAHG 144
                     ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.1E-4119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.389120146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5124146IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-5125144IPR000571Zinc finger, CCCH-type
SMARTSM003560.53154177IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.568154178IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MMIGEIQRSH PSVHIPPCPV SDDHTAAEMY YPAFGSPDGN MLGALAALQR YLPSSEPDPD  60
SDPDISGPES PVHAYSSDHF RMYEFKVRRC GRGRSHDWTE CPYVHPGEKA RRRDPRQYHY  120
SGTSCPDFRK GGCRKGDACE FAHGVFECWL HPARYRTQPC KDGGNCRRRV CFFAHSPDQL  180
RILPQQSPDR VDSFELSSPI RHSSARAFQF SLSPISGSPP VSPRTDSEST QSLSRSFGSS  240
PVNDVVASLR NLQLNKVKSL PSSWNTQFRR YRSGFGSPRG SVLGPGFRSL PTTPTRPGIG  300
YLDVWDKESD DEPAMERVES GRELRAKMFE RLSKENCMDR ADPDPDQNPG ETPDVGWISE  360
LVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548687.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548687.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLV4P4C30.0V4P4C3_EUTSA; Uncharacterized protein
STRINGXP_010548687.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-177C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]