PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548695.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 216aa    MW: 23361.8 Da    PI: 4.7008
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548695.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.1e-183887154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    +gy+GVr +  +grWv+eIr+p++   + r++lg f tae+Aa+a++aa++  +
  XP_010548695.1 38 PGYRGVRMRT-WGRWVSEIREPRK---KSRIWLGPFATAEMAARAHDAAALTVK 87
                    79*****998.**********843...6*********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.08E-203898No hitNo description
PfamPF008476.2E-123888IPR001471AP2/ERF domain
PROSITE profilePS5103222.4713996IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-203996IPR016177DNA-binding domain
SMARTSM003803.2E-3339102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-304097IPR001471AP2/ERF domain
PRINTSPR003671.7E-94051IPR001471AP2/ERF domain
PRINTSPR003671.7E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MVDSPNSDAG SSISTTESIS PSDEPARTKN KKRVRPQPGY RGVRMRTWGR WVSEIREPRK  60
KSRIWLGPFA TAEMAARAHD AAALTVKGSS AVLNFPELSA FLPRPASNSP RDVQAAAAIA  120
AGMDFSAAAV EIQSPPSVSS EASTSSSSEL SEIVELPSLE TSHDESVSEF VFADSVVPGS  180
PWYFSNCYSC NHREDDGTTC EVFESFNFGP LFSLEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1640971573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548695.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548695.11e-156PREDICTED: ethylene-responsive transcription factor ERF037-like
SwissprotO806545e-69ERF37_ARATH; Ethylene-responsive transcription factor ERF037
TrEMBLR0I5F43e-71R0I5F4_9BRAS; Uncharacterized protein
STRINGXP_010548695.11e-155(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77200.11e-54ERF family protein