PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548749.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 334aa MW: 38320.6 Da PI: 6.5061

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548749.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.1	3e-48	10	155	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee................vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhP+d el+++yL +k+++k + ++ + e+d++++ePw+Lp+ +k + kewyfFs rd+ky+tg r+nrat XP_010548749.1 10 LPPGFRFHPSDAELLCHYLLNKIRSKFSHYDHdhdddgeanmrkggntDLVEIDLHTCEPWQLPEGAKLNAKEWYFFSFRDRKYSTGYRTNRATV 104 79********************9995553356678889999999855***********8888899******************** PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 sgyWkatgkd+ v++ ++++vg++ktLvfy++rap+g kt+Wvmhe+rle XP_010548749.1 105 SGYWKATGKDRMVVDPrTRRTVGMRKTLVFYRNRAPNGIKTTWVMHEFRLE 155 **********9867788*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-54	8	173	IPR003441	NAC domain
PROSITE profile	PS51005	52.599	10	173	IPR003441	NAC domain
Pfam	PF02365	4.4E-26	11	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MGLKDIGAKL PPGFRFHPSD AELLCHYLLN KIRSKFSHYD HDHDDDGEAN MRKGGNTDLV 60 EIDLHTCEPW QLPEGAKLNA KEWYFFSFRD RKYSTGYRTN RATVSGYWKA TGKDRMVVDP 120 RTRRTVGMRK TLVFYRNRAP NGIKTTWVMH EFRLECPSAP PEEDWVLCRV FNKCKESQIE 180 DNESRFASST PPYATNYTQM ARSSPPLRNN DHNHHREIPC GWEQIYRPSS SPPSSNIDHP 240 EDQTMKIPCG WDQMMGLVSS SSSHGPQTHE SLLNLLYGSG LEFCDDENDY GNVFSGMDLE 300 KGSSSSDGLV SDIHLENDRL SFEIHKTTVA FHYQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-43	10	178	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-43	10	178	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-43	10	178	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-43	10	178	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	5e-43	10	178	20	173	NAC domain-containing protein 19
3swm_B	5e-43	10	178	20	173	NAC domain-containing protein 19
3swm_C	5e-43	10	178	20	173	NAC domain-containing protein 19
3swm_D	5e-43	10	178	20	173	NAC domain-containing protein 19
3swp_A	5e-43	10	178	20	173	NAC domain-containing protein 19
3swp_B	5e-43	10	178	20	173	NAC domain-containing protein 19
3swp_C	5e-43	10	178	20	173	NAC domain-containing protein 19
3swp_D	5e-43	10	178	20	173	NAC domain-containing protein 19
4dul_A	4e-43	10	178	17	170	NAC domain-containing protein 19
4dul_B	4e-43	10	178	17	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548749.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548749.1	0.0	PREDICTED: NAC domain-containing protein 21/22-like
TrEMBL	V4P4I7	1e-122	V4P4I7_EUTSA; Uncharacterized protein
STRING	XP_010548749.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3436	28	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	1e-121	NAC domain containing protein 74