PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548786.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

ERF

Protein Properties

Length: 357aa MW: 39481.2 Da PI: 6.1002

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548786.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.9	2.1e-17	63	109	5	55
AP2 5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 GVr+++ +gr++AeIrdp++ + r++lg+f+ta eAa a+++a+++++g XP_010548786.1 63 GVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMRG 109 9***.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	2.2E-31	60	123	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.521	60	117	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-6	61	72	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.6E-20	62	117	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.7E-27	63	116	IPR001471	AP2/ERF domain
CDD	cd00018	3.52E-29	63	116	No hit	No description
Pfam	PF00847	5.2E-11	63	109	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-6	83	99	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MTSSQTLDKP LATFDTCQTQ LGFALIHQDT TSKINNDRNA AKPSTGERRG RRSKQADPGR 60 LLGVRRRPWG RYAAEIRDPT TKERHWLGTF DTAHEAALAY DRAALSMRGT QARTNFGYTP 120 ADIHIILTNP NLHSLVVSPH RNDFQSLLPN APSQFVIDHH HHKQYYREPK HSFHQTASPT 180 AAFAKTPVQS NAVHASQSPQ NSSNGSLSSS LDDENNLFFS LSGQERSSNS GYLDCIVPGH 240 CLNPPQDTDE TKASESNEGF RCFDESKALM SQWDDDNNND QFGSCDLSAM ISNYNTALMS 300 SMEEVHNQIN GADDYSVMSQ DFCSWSSSPS SVNAASLQFP SFGDVLAVAD TGFYSLF

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MTSSQTLDKP LATFDTCQTQ LGFALIHQDT TSKINNDRNA AKPSTGERRG RRSKQADPGR  60
LLGVRRRPWG RYAAEIRDPT TKERHWLGTF DTAHEAALAY DRAALSMRGT QARTNFGYTP  120
ADIHIILTNP NLHSLVVSPH RNDFQSLLPN APSQFVIDHH HHKQYYREPK HSFHQTASPT  180
AAFAKTPVQS NAVHASQSPQ NSSNGSLSSS LDDENNLFFS LSGQERSSNS GYLDCIVPGH  240
CLNPPQDTDE TKASESNEGF RCFDESKALM SQWDDDNNND QFGSCDLSAM ISNYNTALMS  300
SMEEVHNQIN GADDYSVMSQ DFCSWSSSPS SVNAASLQFP SFGDVLAVAD TGFYSLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-19	50	116	4	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250\|UniProtKB:Q9LND1, ECO:0000269\|PubMed:17630277, ECO:0000269\|PubMed:19482972, ECO:0000269\|PubMed:23749813}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548786.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17630277, ECO:0000269\|PubMed:23749813}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548786.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF086
Swissprot	Q6J9Q2	1e-118	ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBL	A0A178URC3	1e-115	A0A178URC3_ARATH; PUCHI
STRING	XP_010548786.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5487	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18560.1	1e-116	ERF family protein

Publications ? help Back to Top
Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Chandler JW,Werr W DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis. J. Exp. Bot., 2017. 68(13): p. 3457-3472 [PMID:28859377] Chandler JW Class VIIIb APETALA2 Ethylene Response Factors in Plant Development. Trends Plant Sci., 2018. 23(2): p. 151-162 [PMID:29074232]