PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548797.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family DBB
Protein Properties Length: 172aa    MW: 18886.9 Da    PI: 6.2101
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548797.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.87.9e-07444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ ++e++   +C+++  +lC +C  + H+       H++
  XP_010548797.1  4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnvlskrHSR 44
                    6*****************************65677777765 PP
2zf-B_box26.81e-084688439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                     +C+++++++++  C+d ++ lC++C  ++H         H++
  XP_010548797.1 46 LVCERCNSQPASVRCTDERVSLCQNCDWSGHVPsnpsashHQR 88
                    68****************************9324466666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.385147IPR000315B-box-type zinc finger
CDDcd000213.95E-6447No hitNo description
SMARTSM003368.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.5994391IPR000315B-box-type zinc finger
PfamPF006432.4E-54688IPR000315B-box-type zinc finger
CDDcd000211.55E-54791No hitNo description
SMARTSM003360.44891IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANVLSK RHSRTLVCER CNSQPASVRC  60
TDERVSLCQN CDWSGHVPSN PSASHHQRQT INCYSGCPSS AELGSFWSFV SDNSSPGQSE  120
CEQEMGLMSI ADDGPRENFT AQDVLAGSSS VHETGSRRNC AAKNIWWLAL SL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548797.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019058668.11e-124PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9LUA92e-73COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A0B5AIA61e-71A0A0B5AIA6_9ROSI; CONSTANS-LIKE 9-1
TrEMBLA0A2I4HG753e-72A0A2I4HG75_JUGRE; zinc finger protein CONSTANS-LIKE 10-like
STRINGXP_010548797.11e-124(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.16e-76B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]