PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548803.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 294aa    MW: 32452 Da    PI: 4.353
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548803.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.74.2e-151353444
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    e ks+r+vtfskRr g++KKA ELS   +a++av+   ++g
  XP_010548803.1 13 ETKSQRSVTFSKRRLGLFKKAAELSAISGAQIAVLATPPSG 53
                    7799******************************9877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-17261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.147253IPR002100Transcription factor, MADS-box
CDDcd002662.31E-23383No hitNo description
SuperFamilySSF554551.96E-15362IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-8424IPR002100Transcription factor, MADS-box
PfamPF003191.9E-141355IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-82439IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGTKRKIAMA KRETKSQRSV TFSKRRLGLF KKAAELSAIS GAQIAVLATP PSGNPNAVYS  60
GPFGHSYTDA VVDAFLSGRI PTAHNFLPDK NLGSGFLSEN CDDELGILIE KLISDLKNSP  120
GSGFLSENCD DPDELRIQIE KLSDLKDCVG IIQRKREEQI VSCGHNLDKD SNAKSAQFEG  180
LCDLQDRLGL SQPSKDKLPP LQFPEGFNQL DPDLMSIDEY LSGNRSLFED WGLGTDAQDE  240
SFDGLDITGE WIKFGEQDED NNRDNGFGID WNNPTMDDVS YFDSGHPLAE SLHW
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548803.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548803.10.0PREDICTED: uncharacterized protein LOC104820129
STRINGXP_010548803.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46408.15e-22AGAMOUS-like 97