PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548807.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

M-type_MADS

Protein Properties

Length: 307aa MW: 34093.7 Da PI: 4.1044

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548807.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	42.1	1.1e-13	12	47	9	44
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 r+vtfskRr g++KKA ELS +a++av+ ++g XP_010548807.1 12 RSVTFSKRRLGLFKKAAELSAISGAQIAVLATPPSG 47 9****************************9877766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.4E-5	12	55	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.81E-12	12	56	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.2E-13	12	49	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.344	12	47	IPR002100	Transcription factor, MADS-box
CDD	cd00266	6.81E-17	12	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MYWFDHIHLP LRSVTFSKRR LGLFKKAAEL SAISGAQIAV LATPPSGNPN AVYSGPFGHS 60 YTDAVVDAFL SGRIPTAHNF LPDKNLGSGF LSENCDDELG ILIEKLISDL KNSPGSGFLS 120 ENCDDDLLIL IEKLSDLKNN PGSRFLSENC DDPDELRIQI EKLSDLKDCV GIIQRKREEQ 180 IVSCGHNLDK DSNAKSAQFE GLCDLQDRDK LPPLQFPEGF NQLDPDLMSI DEYLSGNRSL 240 FEDWGLGTDA QDESFDGLDI TGEWIKFGEQ DEDNNGDNGF GIDWNNPTMD DVSYFDSGHP 300 LAESLHW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548807.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548807.1	0.0	PREDICTED: uncharacterized protein LOC104820133
STRING	XP_010548807.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46408.1	1e-16	AGAMOUS-like 97