PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548826.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 181aa MW: 20894.2 Da PI: 5.0693

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548826.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.6	3.6e-34	10	125	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d++ ++PwdLp k+ +e ++wyf+s++ + nrat+sgyW++ d++++++ XP_010548826.1 10 LPPGFRFYPTDEELVVHFLHRKASLLPCHP-DVIPDLDLFPYDPWDLPGKAMEEGRQWYFYSRKTR--------NRATSSGYWRSMEMDEPIFTS 95 79***********************999.99***********77778899**9865........89************998 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk L+fy g++p+ +W+m+ey+l XP_010548826.1 96 sGHKKVGVKKYLTFYLGESPT----NWLMQEYSL 125 67888******888875....*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-45	5	161	IPR003441	NAC domain
PROSITE profile	PS51005	42.84	10	161	IPR003441	NAC domain
Pfam	PF02365	4.7E-23	11	125	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MGDGYGNANL PPGFRFYPTD EELVVHFLHR KASLLPCHPD VIPDLDLFPY DPWDLPGKAM 60 EEGRQWYFYS RKTRNRATSS GYWRSMEMDE PIFTSSGHKK VGVKKYLTFY LGESPTNWLM 120 QEYSLLDSPS SKRGSRTSSS TSSSSHRTDY SKWVICRVYE QNSNEEDDDG TELSCLDEVF 180 L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-38	9	166	16	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-38	9	166	16	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-38	9	166	16	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-38	9	166	16	170	NO APICAL MERISTEM PROTEIN
4dul_A	2e-38	9	166	16	170	NAC domain-containing protein 19
4dul_B	2e-38	9	166	16	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548826.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548826.1	1e-134	PREDICTED: NAC domain-containing protein 104-like
Swissprot	Q8GWK6	5e-94	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A078H0M4	6e-95	A0A078H0M4_BRANA; BnaA02g34250D protein
TrEMBL	A0A398ANP3	6e-95	A0A398ANP3_BRACM; Uncharacterized protein
TrEMBL	A0A3P6AL41	6e-95	A0A3P6AL41_BRACM; Uncharacterized protein
TrEMBL	M4ESY5	6e-95	M4ESY5_BRARP; Uncharacterized protein
STRING	XP_010548826.1	1e-133	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3674	28	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	1e-89	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]