PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548843.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 295aa    MW: 32499.8 Da    PI: 4.7243
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548843.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.1e-112212611055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  XP_010548843.1 221 RKRRERINERLRILQTLVPNG-----TKVDISTMLEEAVHYVKFLQ 261
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-14210277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.907211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-12216270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-11217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.86E-12220265No hitNo description
PfamPF000104.3E-8221261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEAMGEWPGM YTCTTEEADF INQLLASYDG SSSAISGSSS AVSGGFWNVD SHELSLNVNT  60
APRWFCYYTV ANGGSSTGLD VTMNTSSYLV AEETSDCNVN VEEYSSSKSC CGHLPLETVV  120
ESHDENLQPE ISVMTDQKSL GHSESSKKRS RATSIGKNKR NSKTRRNQKN KDDNEGGGEE  180
EAKSKAALNR QNSNTTCSSE DDSNGGGEEQ NATDPQSLYA RKRRERINER LRILQTLVPN  240
GTKVDISTML EEAVHYVKFL QLQIKLLSSD DLWMYAPIAY NGMDIGLDLK LNALR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548843.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138221.12e-99PREDICTED: transcription factor bHLH85-like
SwissprotQ84WK02e-95BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A1J3GYB93e-98A0A1J3GYB9_NOCCA; Transcription factor bHLH85
STRINGXP_010548843.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.13e-79ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]