PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548846.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 311aa MW: 34914.1 Da PI: 4.8647

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548846.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.9	3.6e-08	166	213	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P + k K+ +L + ++Y++sL+ XP_010548846.1 166 SHSVAERMRREKISERMKFLQGLVPGC----RKITGKVGMLDEIINYVQSLE 213 8***********************9....567*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.80E-10	160	217	No hit	No description
SuperFamily	SSF47459	2.36E-15	160	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.818	162	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-15	162	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-5	166	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-7	168	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MAVFEHQTAH PTNGRDLLLH EQTVYHPDFA GNFSGYFPDP LFTNSGTCAY DEGWLMAMAG 60 SLEPNPCLRT AWPSSGLGLR LGFRLGVSTE KMSGPGSFKK RKGVDNVEED PKEEEKKKMR 120 VNEEESEEKS KMNYKPKKES SSNSSSNDDS KDFIRVRARR GQATDSHSVA ERMRREKISE 180 RMKFLQGLVP GCRKITGKVG MLDEIINYVQ SLERQVEFLM MKWAALNPNP SPEFSFEESF 240 TNEDDPCMMI PTSEIIPSGF DDQLSPTQQA VSWSDGTDAV LTSSSDVVRT TDRLLCITDT 300 LISPASENVQ W

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548846.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019058676.1	0.0	PREDICTED: transcription factor bHLH63-like
STRING	XP_010548846.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	3e-45	cryptochrome-interacting basic-helix-loop-helix 1