PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548849.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 246aa    MW: 27613.8 Da    PI: 4.9801
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548849.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.81.6e-141251241
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    +ie k  r+v fskRr+g++ KA+EL+ L ++ +a+++  
  XP_010548849.1 12 KIEKKEARSVAFSKRREGLFRKASELCLLGNTHIAILVTP 51
                    79**********************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.9E-14363IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.909349IPR002100Transcription factor, MADS-box
CDDcd002666.65E-23482No hitNo description
PRINTSPR004048.7E-8525IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-18587IPR002100Transcription factor, MADS-box
PfamPF003191.4E-141253IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-82540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGGTKRKIPM QKIEKKEARS VAFSKRREGL FRKASELCLL GNTHIAILVT PPSANSNVSF  60
YSFGHSSVDE VVDAFLNNRT PTLCDDHALS RSRESKNKDR LAGKKQTSGL GFRWEEDGFE  120
ETASTRDLEV AIDEISELMN IVRLRLNDMN NQRPRLLEKP KPGELTVQDL GSHGGKHDDT  180
LGNLAPQVSD QPNRISENSD IFTEAMANSG IRFEELEEAS SLYEKDLEDP PVDGINFDDI  240
FTHFNF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548849.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548849.10.0PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLA0A178WIP13e-40A0A178WIP1_ARATH; AGL55
STRINGXP_010548849.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.12e-44AGAMOUS-like 55