PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548857.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 254aa    MW: 27770.9 Da    PI: 5.0123
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548857.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00024138159223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +Cp+C + F ++     H+r H
  XP_010548857.1 138 VCPYCQRIFGSWKAVFGHLRAH 159
                     8*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MNRRHLIFPS AILMEMSAKE NRSGDEKVEI EDEGEETMMR EIVLGLRALC LQDDFWDNPN  60
QDDNNPDKGK TLIENVVAAE EEAIRDKGKR DKEKEQTSRS GSKKRSKILK NDVAGTSRSG  120
STKKRAPELI DPPAGPLVCP YCQRIFGSWK AVFGHLRAHK ERQHHGFLPP PRFSAAGEGI  180
TIGCSGSGAA KSVIFVASNL DGSSGDGDGK SLGFDLNVAP GEDSEDSIIS NPNPKSFDLN  240
KSPPKEEDPE EDIP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548857.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548857.10.0PREDICTED: uncharacterized protein LOC104820185
STRINGXP_010548857.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.17e-20C2H2 family protein